In order for DFM Checks to properly function you must perform Netlist Extraction beforehand (especially on Gerber files - because other formats like ODB++, 2581 already have the nets included).
To preform netlist extraction. go to menu: Tools | Nets | Netlist Extraction...
or during DFM Check, check the option "Overwrite Nets"
Why? Gerber data is just a bunch of simple geometry objects (i.e lines, aperture shapes, and polygons). A netlist is an internal map of the connectivity for all objects on metal layers.
Now when you perform DFM Checks (with Nets), all checks will preform as intended - even on Negative Plane layers.
Best regards,
Simon
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