How do I define component footprints as TFT?

To define THT parts for each footprint, you can do this while "programming SMT Pick and Place" (i.e when using Build Components), https://numericalinnovations.freshdesk.com/support/discussions/topics/14000002336

Or, if footprints are already defined perform the following to assign them as THT:

1. Go to menu:  Window / Footprint Browser... 
   
2. Select the Footprint you wish to define as THT. 
   
3. Look for the Type section list and choose "Thru-Hole".  (See screen capture below)
   
4. Press "Save Footprint" to update the changes.